Gegenees

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Latest versions
Linux 32bit: Gegenees_v2.2.1-LNX32.tar.gz (36MB)
Linux 64bit: Gegenees_v2.2.1-LNX64.tar.gz (37MB)

2014-05-26 Gegenees_v2.2.1-LNX

Added functionality to add genomes to an existing pangenome.
Added the possibility to use a variance filter on the conservation pattern file.

2014-03-26 Gegenees_v2.1.1-LNX

Minor bug fixes in the pangenome module.

2014-02-27 Gegenees_v2.1.0-LNX

Remodeled the pangenome construction process.
New functionality for adding genomes to a compiled pangenome.
Minor bug fixes.

2013-10-24 Gegenees_v2.0.3-LNX

Added export function for conservation levels in pangenome.
Minor bug fixes.

2013-10-08 Gegenees_v2.0.2-LNX

Extended pangenome functionality.
Dynamic coloring in heat map.

2013-06-03 Gegenees_v2.0.1-LNX

Updated help section.

2013-01-21 Gegenees_v2.0.0-LNX

Added help section.
Added update functionality.
Added Pangenome generator.
BLAST engine update.

2012-06-27 Gegenees_v1.1.5-LNX

Added variation diagram functionality.

2012-06-18 Gegenees_v1.1.4-LNX

Minor changes to the BLAST engine.
Issue with the paus function fixed.

2012-06-07 Gegenees_v1.1.3-LNX

BLAST engine updated.

2012-05-30 Gegenees_v1.1.2-LNX

Minor bug fixes.

2012-05-29 Gegenees_v1.1.1-LNX

Added debugging export in the help menu.
Minor bug fixes.

2012-05-11 Gegenees_v1.1.0-LNX

Improved user interface
Fixed problems related to unzipping tar.gz-files.

2012-03-28 Gegenees_v1.0.3-LNX

Gegenees_v1.0.3-LNX64.tar.gz (38MB)
Gegenees_v1.0.3-LNX64-BLAST+.tar.gz (174MB)
The import of fastafiles have been updated so that problems when using these files as reference genomes have been solved.
Fixed an issue regarding the show sequence dialog window.

2012-03-14 Gegenees_v1.0.2-LNX

Fixed an issue relating to the import funtion.
Fixed a bug concerning the usage of spaces in the workspace path.
Added BLAST+ binaries into the Gegenees package as a download alternative.
Added automatic BLAST+ awareness in the Gegenees BLAST+ package.

2012-02-20 Gegenees_v1.0.1-LNX

Zoom-out button for score overview added.
New splash screen.

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Linux
Mac
Windows
Comparisons

DOCUMENTATION
CONTACT

Latest versions
Windows 32bit: Gegenees_v2.2.1-WIN32.zip (37MB)
Windows 64bit: Gegenees_v2.2.1-WIN64.zip (37MB)

2014-05-26 Gegenees_v2.2.1-WIN

Added functionality to add genomes to an existing pangenome.
Added the possibility to use a variance filter on the conservation pattern file.

2014-03-26 Gegenees_v2.1.1-WIN

Minor bug fixes in the pangenome module.

2014-02-27 Gegenees_v2.1.0-WIN

Remodeled the pangenome construction process.
New functionality for adding genomes to a compiled pangenome.
Pointed the automated BLAST downloader to BLAST v2.2.28.
Minor bug fixes.

2013-10-24 Gegenees_v2.0.3-MAC

Added export function for conservation levels in pangenome.
Minor bug fixes.

2013-10-08 Gegenees_v2.0.2-WIN

Extended pangenome functionality.
Dynamic coloring in heat map.

2013-06-03 Gegenees_v2.0.1-WIN

Updated help section.

2013-01-21 Gegenees_v2.0.0-WIN

Added help section.
Added update functionality.
Added Pangenome generator.
BLAST engine update.

2012-06-27 Gegenees_v1.1.5-WIN

Added variation diagram functionality.

2012-06-18 Gegenees_v1.1.4-WIN

Minor changes to the BLAST engine.
Issue with the paus function fixed.

2012-06-07 Gegenees_v1.1.3-WIN

BLAST engine updated.

2012-05-30 Gegenees_v1.1.2-WIN

Minor bug fixes.

2012-05-29 Gegenees_v1.1.1-WIN

Added debugging export in the help menu.
Minor bug fixes.

2012-05-11 Gegenees_v1.1.0-WIN

Improved user interface
Fixed problems related to unzipping tar.gz-files.

2012-04-19 Gegenees_v1.0.4-WIN

Windows 32bit: Gegenees_v1.0.4-WIN32.zip (129MB)
Windows 64bit: Gegenees_v1.0.4-WIN64.zip (118MB)
Windows 32bit: Gegenees_v1.0.4-WIN32-BLAST+.zip (177MB)
Windows 64bit: Gegenees_v1.0.4-WIN64-BLAST+.zip (178MB)
Fixed an issue regarding import on Windows platforms.

2012-03-28 Gegenees_v1.0.3-WIN

The import of fastafiles have been updated so that problems when using these files as reference genomes have been solved.
Fixed an issue regarding the show sequence dialog window.

2012-03-14 Gegenees_v1.0.2-WIN

Fixed an issue relating to the import funtion.
Fixed a bug concerning the usage of spaces in the workspace path.
Added BLAST+ binaries into the Gegenees package as a download alternative.
Added automatic BLAST+ awareness in the Gegenees BLAST+ package.

2012-02-20 Gegenees_v1.0.1-WIN

Zoom-out button for score overview added.
New splash screen.

ABOUT
DOWNLOAD

Linux
Mac
Windows
Comparisons

DOCUMENTATION
CONTACT

Latest versions
Gegenees_v2.2.1-MAC64.zip (37MB)

2014-05-26 Gegenees_v2.2.1-MAC

Added functionality to add genomes to an existing pangenome.
Added the possibility to use a variance filter on the conservation pattern file.

2014-03-26 Gegenees_v2.1.1-MAC

Minor bug fixes in the pangenome module.

2014-02-27 Gegenees_v2.1.0-MAC

Remodeled the pangenome construction process.
New functionality for adding genomes to a compiled pangenome.
Minor bug fixes.

2013-10-24 Gegenees_v2.0.3-MAC

Added export function for conservation levels in pangenome.
Minor bug fixes.

2013-10-08 Gegenees_v2.0.2-MAC

Extended pangenome functionality.
Dynamic coloring in heat map.

2013-06-03 Gegenees_v2.0.1-MAC

Updated help section.

2013-01-21 Gegenees_v2.0.0-MAC

Added help section.
Added update functionality.
Added Pangenome generator.
BLAST engine update.

2012-06-27 Gegenees_v1.1.5-MAC

Added variation diagram functionality.

2012-06-18 Gegenees_v1.1.4-MAC

Minor changes to the BLAST engine.
Issue with the paus function fixed.

2012-06-07 Gegenees_v1.1.3-MAC

BLAST engine updated.

2012-05-30 Gegenees_v1.1.2-MAC

Minor bug fixes.

2012-05-29 Gegenees_v1.1.1-MAC

Added debugging export in the help menu.
Minor bug fixes.

2012-05-11 Gegenees_v1.1.0-MAC

Improved user interface
Fixed problems related to unzipping tar.gz-files.

2012-03-28 Gegenees_v1.0.3-MAC

Gegenees_v1.0.3-MAC64.zip (48MB)
Gegenees_v1.0.3-MAC64-BLAST+.zip (302MB)
The import of fastafiles have been updated so that problems when using these files as reference genomes have been solved.
Fixed an issue regarding the show sequence dialog window.

2012-03-14 Gegenees_v1.0.2-MAC

Fixed an issue relating to the import funtion.
Fixed a bug concerning the usage of spaces in the workspace path.
Added BLAST+ binaries into the Gegenees package as a download alternative.
Added automatic BLAST+ awareness in the Gegenees BLAST+ package.

2012-02-20 Gegenees_v1.0.1-MAC

Zoom-out button for score overview added.
New splash screen.

ABOUT
DOWNLOAD

Linux
Mac
Windows
Comparisons

DOCUMENTATION
CONTACT

Here you can download pre-calculated comparisons including a detailed alignment. To import a comparison in Gegenees, click the button "Import comparison..." under the tab "Workbench Overview".

Bacillus example set

Comparison and accurate alignment of six Bacillus genomes.
Donwload: comparison_Bacillus_testset.zip (77MB)

Mycoplasma genus

Comparison and accurate alignment of 34 Mycoplasma genomes.
Donwload: comparison_Mycoplasma.zip (89MB)

Bifidobacterium genus

Comparison and fast alignment of 28 Bifidobacterium genomes.
Donwload: comparison_Bifidobacterium.zip (140MB)

Prevotella genus

Comparison and accurate alignment of 35 Prevotella genomes.
Donwload: comparison_Prevotella.zip (492MB)

Borrelia genus

Comparison and accurate alignment of 25 Borrelia genomes.
Donwload: comparison_Borrelia.zip (73MB)

Foot-and-mouth disease virus

Complete comparison and alingment of 254 Foot-and-mouth disease virus.
Donwload: comparison_FMDV.zip (22MB)

Escherichia coli

Complete comparison and alignment of 96 E. coli genomes and one E. fergusonii genome.
Donwload: comparison_Ecoli.zip (1.9GB)