Welcome to the Gegenees project

Gegenees is a software project for comparative analysis of whole genome sequence data and other Next Generation Sequence (NGS) data. The software can e.g. compare a large number of microbial genomes, give phylogenomic overviews and define genomic signatures unique for specified target groups.

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups
Agren J, Sundstrom A, Hafstrom T, Segerman B.
PLoS One. 2012;7(6)
PMID: 22723939 ( full text )

Plot average similarity of hundreds of genomes. Enlarge